Some background: I am a Computer Engineering major attending school right now, and I just completed a project that created a microprocessor with a super simple instruction set that ran on an FPGA. I chose to implement a simple file storage scheme, a VGA text only display output, and a PS/2 keyboard input. I wrote two main programs, a firmware that was in ROM in the processor and a kernel that provided a bunch of library type functions, and was capable of loading and executing files from the filesystem. This project was challenging and overall a lot of fun.
My Question: I want to do some super low level programming on a modern computer, but I can't seem to find any resources or documentation that help me get started. To be clear, I want to find the proper documentation that would help me to write a program in C, x86, or x86-64 assembly that I could compile, and format into some form of bootable data. I know this is a daunting task, and typically not something a hobbyist would take on, but I know that it's possible (Terry Davis's TempleOS).
Are there any websites or books that I can read that will contain the specifics needed to make something like this?